tool

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Streamlining generation of enzyme-constrained models using GECKO

MEMOTE for standardized genome-scale metabolic model testing

A community tool for evaluating quality of metabolic models

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

A genome-scale method for simulating energy costs of lipid metabolism

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

A Matlab toolbox for metabolic network reconstruction

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints

A computational framework for connecting metabolism and enzyme levels

HIPPO: An Iterative Reparametrization Method for Identification and Calibration of Dynamic Bioreactor Models of Complex Processes

A method for evaluating kinetic parameters in bioreactor models.