GEMs

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

A genome-scale method for simulating energy costs of lipid metabolism

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

A Matlab toolbox for metabolic network reconstruction

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints

A computational framework for connecting metabolism and enzyme levels

Genome scale models of yeast: towards standardized evaluation and consistent omic integration

A review on genome-scale modeling of _S. cerevisiae_

Construction of robust dynamic genome-scale metabolic model structures of Saccharomyces cerevisiae through iterative re-parameterization

An algorithm for improving dFBA predictions and its implementation in yeast.