GEMs

From genotype to phenotype: computational approaches for inferring microbial traits relevant to the food industry

A review of knowledge and data-driven computational approaches used in biotech

Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae

Using computational simulations to find the best way to produce the heme cofactor

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Streamlining generation of enzyme-constrained models using GECKO

Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation

A quantitative multi-omic dataset of _S. cerevisiae_ at increasing growth rates

Emergence of Phenotypically Distinct Subpopulations Is a Factor in Adaptation of Recombinant Saccharomyces cerevisiae under Glucose-Limited Conditions

Studying subpopulations of a _S. cerevisiae_ strain with single-cell level technology

Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism

p-thermo: Development of a genome-scale model of _P. thermoglucosidasius_

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism

Over-producing tryptophan using a combination of machine learning and flux balance analysis

MEMOTE for standardized genome-scale metabolic model testing

A community tool for evaluating quality of metabolic models

Model-Assisted Fine-Tuning of Central Carbon Metabolism in Yeast through dCas9-Based Regulation

Over-producing acetyl/malonyl-CoA using _in silico_ & experimental methods

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

The consensus metabolic model of yeast as a standard in the community